JWSS - Journal of Water and Soil Science

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During the summer of 1998, leaf and pod blight symptoms of bean were observed in Arak, The survey in the following year showed that the disease had an increasing trend in bean-growing regions of Markazi Province. It appeared that more severe losses occurred in fields equipped with sprinkler irrigation system. Symptoms of diseased plants consisted of formation of irregular necrotic lesions on leaves surrounded by yellow halo. Under favourable conditions, these lesions gradually expanded and heavily infected leaves became blighted. The primary symptoms on infected pods were the development of water soaked spots which later turned to dark or reddish blotches. In attempts to investigate the causal agent, two types of a Gram negative bacteria with raised, yellow and translucent colonies were isolated from leaves and pods of blighted beans. All strains produced Xanthomonadin pigment and their inoculation on young bean plants induced disease symptoms similar to those observed under field conditions. Based on morphological, physiological and biochemical properties, the predominant pathogenic type was identified as Xanthomonas axonopodis pv. phaseoli. However, the other strain with the same properties, but capable of producing melanin pigment in nutrient media, was assigned to X. axonopodis pv. phaseoli var. fuscans.

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To investigate drought tolerant isolates of rhizobial symbioant of lentil (Lens culinaris L.), 12 soil samples were collected from cultivated and non-cultivated area of Golestan, Chaharmahal-O-Bakhtiari and Isfahan provinces. Local cultivars of lentil including Binam Dorosht, Ghazvini and Faridani were planted in each soil sample. After 10 weeks, a total of 324 rhizobial isolates were recovered from root nodules of the lentil plants. Evaluation of the ability of the isolates to grow at different concentration of salt showed that all isolates grew normally on 200 mM NaCl and only 20% was determined as salt tolerant isolats(>400mM). Among the isolates RL249 was classified as superior salt tolerant strain due to growing on 600 mM salt. The drought tolerance of the isolates was also examined, using PEG6000. In general, the salt tolerant isolates were also drought tolerant, however their tolerance to salinity and drought is not related to their geographical origin. In a randomized split factorial design with three replications, the effectiveness of tolerant isolates(RL249 and RL211) and a sensitive strain (RL 77) was compared on two cultivars of lentil (Binam Dorosht and Faridani) under water stress treatments with the consumptions of 50, 75,90 and 98% of soil available water. Although nodulation rate was reduced in both cultivars as the consequence of drought stresses, plants of Binam Dorosht cultivar showed high nodulation rate due to the increased fresh weight of the roots. Despite the fact that RL249 was identified as a superior nodulating and salt/drought isolate, however nodulation efficiency was decreased significantly under water stress treatments with more than 50 % of soil available water.

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To determine genetic diversity among some Iranian local varieties of alfalfa, six geographically diverse populations including: Bami, Rahnani, Nikshahri, Yazdi, Hamadani (from Isfahan), Hamadani (from Shiraz) along with Ranger, an American commercial variety, were evaluated using a set of 24 EST-SSR primers developed from cDNA library of Medicago truncatula and three microsatellite loci, identified from genomic library of M. sativa. Of the pairs of primers tested, four loci from EST-SSRs (AW9, BEE, TC6 and TC7) and genomic microsatellite (Afctt32), were found appropriate for assessing genetic diversity between these alfalfa genotypes. In total, 46 alleles were detected from the five loci in the samples of alfalfa examined. The number of alleles per locus in populations ranged from six to eleven and genetic diversity indices of loci were variable from 0.62 to 0.87 for the populations. Genetic relationship analysis of EST-SSR data revealed separation of Iranian populations from Ranger. It is likely that the parental origin of primary population from which Ranger has been derived is different from that of Iranian populations. Iranian local populations of alfalfa in this study were grouped in two main clusters. Alfalfa populations Hamadani and Rahnani, which are adapted to cold claimates, were grouped in one cluster and populations Bami, Yazdi and Nikshahri, belonging to the trpoical areas, were placed in the next cluster. The positioning of EST-SSR loci in coding regions of genome, possibly increases the usefulness of these markers to clarify inter specific genetic relationships among alfalfa populations.

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The identification of potato cultivars is a recurrent objective of potato research. The research is prompted by the increasing number of potato cultivars and the importance of seed purity. In developing a reliable method for identification of the imported potato cultivars and determining their genetic relationship, the capacity of 10 polymorphic simple sequence repeat markers (SSRs) was evaluated for the analysis of 28 commercial cultivars of potato. The number of alleles detected at different loci ranged from 3 to 10 alleles with a total of 57 for all loci and a mean of 5.7 alleles per locus. In the 28 potato cultivars analyzed, the number of heterozygous genotypes per locus varied between 6 to 28 with an average number of heterozygous genotypes per locus of 18, considering the 10 loci studied. Based on the resulting dendrogram of jacquard's similarity coefficient and UPGMA analysis, the potato cultivars were placed in two major groups. However, the results from similarity coefficient confirmed the close phylogenetic relationships among members in each cluster. The dendrogram derived from SSRs data clustered together Kenebek, Florida and Atlantic which are known as American potato cultivars, but Stanbuli, an old cultivar in Iran, was placed in concert with European cultivars. This finding might be an indication that this cultivar along with other unidentified cultivars, growing in local fields, has been introduced from European countries to Iran. The results obtained illustrate the appropriate utility of SSRs to assess genetic relationships of potato cultivars and develop a PCR- based tool for evaluation of potato seed purity.

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Microsatellite DNA markers isolated from wild species khinjuk (Pistacia khinjuk Stocks.) were used to evaluate the genetic diversity available in Iranian pistachio cultivars. Out of the 27 SSR primers tested initially, 25 could amplify the DNA in different pistachio cultivars, of which 19 primer pairs produced clear bands. Based on the amplification profiles of the genotypes by the remaining primer pairs, eight primers produced a monomorphic product and other 11 microsatellites markers were found polymorphic among the genotypes. The number of putative alleles amplified by each polymorphic SSR locus ranged from two to eleven alleles with a total of 48 alleles. An average of alleles and observed heterozygosity per locus was 3.69 and 0.69 respectively, showing that these microsatellites are highly informative for pistachio fingerprinting. The UPGMA cluster plots based on nei index placed the 20 commercial pistachio cultivars into a major group containing three distinguished subgroups however, genotypes, namely, Ghazvini zudras and Sarakhs (wild P. vera), were clearly situated into two distinct clusters, distant from the domesticated genotypes studied here. Both Ghazvini zudras and Sarakhs are known as small-fruited genotypes which are grown in restricted regions. Therefore, the distinctness of these genotypes can be attributed to their geographical isolation and morphological characteristics. It seems that Ghazvini zudras probably originated from Sarakhs variety which posses an important role in development of pistachio cultivars. The present study revealed that the khinjuk pistachio microsatellites are well distributed in the genome of P.vera , and are informative for estimating the extent of genetic diversity and characterization of pistachio cultivars.

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To understand the role of relative humidity rate, host genotype, inoculation method and growth stage in epidemiology of bean common blight, two greenhouse experiments were carried out monitoring epiphytic population size of Xanthomonas axonopodis pv. phaseoli (Xap) and disease severity. The result showed significant differences among genotypes, inoculation methods and growth stages for epiphytic population size and sam effects except genotypes for disease severity. The epiphytic population size was significantly higher on spray inoculated Khomein cultivar of bean during flowering (R6). However, the relative humidity rates did not significantly affect population dynamics of epiphytic Xap and the disease severity. Two field experiments were also carried out to determine the effects of irrigation systems (furrow irrigation and overhead sprinkler irrigation), inoculation method, growth stage and their interactions on epiphytic population size of Xap and disease severity. The result showed that the epiphytic population size and disease severity were higher on spray inoculated plants irrigated with overhead sprinkler system during pods filling (R8). In this study, a significant positive correlation was found between epiphytic population size of Xap and bean common bacterial blight severity.

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To characterize the geographical distribution of medicago-nodulating rhizobia in western regions of Iran, 950 Sinorhizobium isolates were trapped from a combination of two local alfalfa populations (Hamedani, Nikshahri) together with a foreign cultivar ( Kodi) and soil samples from eight sites across Kurdestan, Kermanshah, Eastern Azarbayjan and Lorestan provinces. Also, a total of 45 isolates were obtained from nodules of naturally grown Melilotus officinalis (14 isolates) and Trigonella foenum-graecum (31 isolates) plants in Isfahan. On the basis of PCR partial amplification of the plasmid born nod box gene and chromosomal mucR gene of the isolates,16S ribosomal DNA PCR-restriction fragment length polymorphism analysis, and the nucleotide sequence, three isolates from alfalfa, seven isolates from M. officinalis and 13 isolates from T. foenum-graecum were proved to be Sinorhizobium medicae. The remaining isolates (943 from alfalfa, seven from M. officinalis and 18 from T. foenum-graecum) were identified as S. melilloti. Both species, S. meliloti and S. medicae, were recovered from nodules of all the hosts although S. meloti was clearly more dominant in nodulating different populations of alfalfa. Taken together, these results indicated that the abundance of S. meliloti is independent of the site of isolation and have a wide geographical distribution. In this study, the banding pattern resulting from PCR amplification of 16S rRNA gene, followed by digestion with Rsa I, clearly differentiated S. meliloti and S. medica strains, showing that PCR-RFLP is an appropriate method to discriminate medicago-nodulating rhizobian with relative rapidity.

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Transporting borrow materials for proper infrastructure of water channels to bear the load of such structures is important in the development plans. Therefore, in this research clay nanocomposite material with a weight ratio of %1 was added to the soil. Soil sample was taken from the bed of the C25 canal (distributary of GanjAfrooz diversion dam within Alborz project area) at various intervals and the depth of 1 meter. Unconfined compression strength and consolidation tests were performed on the selected soil. The results showed that the addition of nanoclay to the soil increased the rate of shear resistance, cohesion property and compressibility of soil, respectively, equal to 14.13, 14.13and 82.76 percent. Also, angle of failure and ultimate void ratio decreased. As a result, the addition of nanoclay to the soil makes soil strength and stability greater and there are no problems caused by bed erosion and transporting of borrow material for infrastructure of channel.