Showing 3 results for Microsatellite Markers
M. Falahati-Anbaran, A. A. Habashi, M. Esfahany, S. A. Mohammadi, B. Ghareyazie,
Volume 10, Issue 3 (10-2006)
Abstract
Annual medics are used for hey production, soil protection, biological fixation of N2 and green manure. In the present study, the inter and intra specific genetic diversity and relatedness of 4 diploid and two tetraploid (M. rugosa and M. scutellata) annual medics were evaluated using microsatellite markers. PCR analysis was performed on genomic DNA from individual plant and PCR products were detected using standard polyacrylamide sequencing gel. Totally twenty five polymorphic alleles were observed in the studied species. Average intra-specific genetic diversity ranged from zero (0.0) in both M. rugosa and M. scutellata to 0.114 in M. minima species, and the level of genetic diversity was similar in both M. orbicularis and M. truncatula species. Analysis of molecular variance (AMOVA) was used to partition the overall genetic diversity into within and among species, and between diploids and tetraploids. The results revealed significant (P<0.05) inter and intra-specific genetic variation. Pairwise comparisons based on Fst indicated significant differences among all of the species. Clustering analysis using UPGMA algorithm based on coancestary coefficient revealed a clear genetic relationship among species. The hypothesis on a common origin of two tetraploid species was supported by UPGMA clustering and phylogenetic analysis. The high level of Genetic diversity in spiny pod species respect to spineless pod species suggested the high importance of species with spiny pods in annual medics evolution. The findings support the usefulness of microsatellite markers for assessing inter and intra specific genetic diversity, differentiation and genetic relationships.
M. H. Banabazi, S. Esmaeilkhanian, S. R. Miraei Ashtiani, M. Moradi Shahrbabak,
Volume 10, Issue 4 (1-2007)
Abstract
Genetic variation within and between five Iranian sheep populations including Sanjabi (SAN), Kordi Kordistan (KKO), Kordi Khorasan (KKH), Mehraban (MEH) and Moghani (MOG) was assessed using six microsatellite markers (McMA2, McMA26, MAF64, OarAE64, OarCP26 and OarFCB304). The PCR reactions were successfully perfomed with all primers except OarAE64. All locus-population combinations were at Hardy-Weinberg equilibrium except McMA2 in MOG population (P<0.005). Polymorphism criteria showed that the five studied loci were polymorphic in all populations. The lowest DA genetic distance (0.234) was observed between KKH and KKO and the highest (0.388) between SAN and MOG populations. The dendrograms based on DA distances were drawn using unweighted pair-group method using an arithmetic average (UPGMA) and neighbor-joining (NJ) method. KKO, KKH and SAN were grouped together at one cluster and MEH and MOG at another by both methods. The average expected heterozygosity for each populations (as interpopulation variation) ranged from 0.744 to 0.847 for KKH and MEH, respectively. The estimated time of divergence for two Kordi populations (KKO and KKH) was 445 years that complies with historical evidences. The findings of this research confirmed that microsatellite variation could be a useful tool for screening of investigating biodiversity among domestic animals.
S. Esmail Khanian, A. Negati Javaremi, F. Afraz, P. Daneshyar, S. Ghanbari,
Volume 11, Issue 41 (10-2007)
Abstract
In order to identify polymorphic microsatellite markers and evaluae genetic variation within Baluchi sheep population, nineteen microsatellite loci were studied. Whole Blood samples were collected from 156 sheep at north eastern animal breeding station of Iran (Abbasabad-Mashhad). DNA was extracted by salting-out procedure with some modifications. Polymerase chain reactions were successfully done except for UNC5C locus. PCR products were electrophoresed on 8% denaturing polyacrylamide gels stained according to rapid silver staining procedure. The genotype and allelic frequencies were calculated by direct counting and used for estimating of different polymorphism and genetic variation criteria. This population wasn't at Hardy-Weinberg equilibrium except for OarAE101 locus (P<0.005). Heterozygosity (gene variation) ranged from 0.1 to 0.93. BULGE5E and BM1329 loci were monomorphic. In conclusion, this investigation showed high polymorphism at the studied loci, so they could be used in future studies.
